Received: Feb 17, 2025 / Accepted: Mar 27, 2025 / Published: Mar 31, 2025
A genome-wide association study (GWAS) was performed to identify potential QTLs associated with salt stress tolerance in rice. The correlation between the genotyping data set and the phenotypic expression of 213 diverse rice accessions for 11 biochemical and agronomic traits was assessed. GWAS was run using a mixed linear model and population parameters previously defined in Tassel 5.0 to predict genomic regions associated with traits for the Japonica and Indica subpopulations. GWAS resulted in the detection of numerous SNP markers scattered over the rice genome that were associated with various salt tolerance traits. A QTL region on chromosome 3 was found to contribute to the variation in salt tolerance in the Indica subpopulation and related to the two traits of sheath Ca and sheath Mg contents. Three QTL regions on chromosomes 2, 4, and 5 were found to contribute to the variation in salt tolerance in the Japonica subpopulation and related to the traits of sheath Na content, sheath Mg content, the sheath Na/K ratio, leaf Na content, and the leaf Na/K ratio.